Function reference • scmisc

All functions
`as.CellDataSet()`	as.CellDataSet
`cluster_cells()`	cluster_cells
`compute_density()` `cell_density()`	compute_density
`compute_jaccard()`	compute_jaccard
`compute_percentage_variance()`	compute_percentage_variance
`compute_purity()`	compute_purity
`create_training_sets()`	create_training_sets
`demux()`	demux
`demux_cutoff()`	demux_cutoff
`expand_column()`	expand_column
`filter_cells()`	filter_cells
`filter_genes()`	filter_genes
`fortify(<DataFrame>)`	fortify.DataFrame
`get_assay_summary()` `get_expression()`	Compute summary from assay matrix
`get_coldata()`	get_coldata
`get_coord()`	get_coord
`get_coord_names()`	get_coord_names
`get_data()`	get_data
`get_rowdata()`	get_rowdata
`plot_coord()`	plot_coord
`plot_enrichment()`	plot_enrichment
`plot_heatmap()`	plot_heatmap
`plot_jaccard()`	plot_jaccard
`plot_loadings()`	plot_loadings
`plot_pairs()`	plot_pairs
`plot_pseudotime_gene()`	plot_pseudotime_gene
`plot_pseudotime_heatmap()`	plot_pseudotime_heatmap
`plot_pseudotime_modules()`	plot_pseudotime_modules
`plot_purity()`	plot_purity
`plot_trajectory()`	plot_trajectory
`plot_trajectory_graph()`	plot_trajectory_graph
`plot_velocity()`	plot_velocity
`plot_violin()`	plot_violin
`plot_volcano()`	plot_volcano
`process()`	process
`reduce_dim()`	reduce_dim
`run_enrichment()`	run_enrichment
`sample_cells()`	sample_cells
`sce`	SingleCellExperiment dataset.
`sort_features()`	sort_features
`top_deg()`	top_deg

Reference