Compute summary from assay matrix

get_assay_summary(x, ...)

# S3 method for SingleCellExperiment
get_assay_summary(
  x,
  name,
  assay.name = "logcounts",
  column = "symbol",
  sum.fun = mean,
  ...
)

# S3 method for Seurat
get_assay_summary(
  x,
  name,
  assay.name = NULL,
  slot = "data",
  column = "symbol",
  sum.fun = mean,
  ...
)

get_expression(...)

Arguments

x: object to compute summary.
...: arguments passed down to specific methods.
name: name of the feature value for which to compute the summary.
assay.name: name of the assay slot.
column: name of the column where to find 'name' (default: 'symbol').
sum.fun: summary function (by default mean).
slot: name of the Seurat data slot.