plot_heatmap — plot_heatmap • scmisc

plot_heatmap

plot_heatmap(x, ...)

# S3 method for Seurat
plot_heatmap(
  x,
  assay = NULL,
  slot = "data",
  scale = TRUE,
  top_ann = NULL,
  top_ann_col = NULL,
  ...
)

# S3 method for SingleCellExperiment
plot_heatmap(x, assay = "logcounts", top_ann = NULL, top_ann_col = NULL, ...)

# S3 method for matrix
plot_heatmap(x, scale = TRUE, show_column_names = FALSE, ...)

Arguments

x: object to plot.
...: arguments passed down to ComplexHeatmap::Heatmap.
assay: assay name for Seurat and SingleCellExperiment objects.
slot: slot name for Seurat objects.
scale: whether to scale data data.
top_ann: names of columns to be used as top annotations.
top_ann_col: color definition for the categories in the top annotations.
show_column_names: whether to show column names (default: FALSE).