filter_cells

filter_cells

filter_cells(x, ...)

# S3 method for SingleCellExperiment
filter_cells(x, min.genes = 10, min.count = 0, assay.name = "counts", ...)

# S3 method for matrix
filter_cells(x, min.genes = 10, min.count = 0, ...)

Arguments

x

object to filter.

...

arguments passed down to methods.

min.genes

minimum number of genes with min.count for cell to be preserved.

min.count

minimum number of counts to be considered expressed.

assay.name

name of assay to obtain matrix of counts.