plot_trajectory — plot_trajectory • scmisc

Plot the cell embedings with colors indicating the increasing trajectory pseudotime.

plot_trajectory(x, ...)

# S3 method for SingleCellExperiment
plot_trajectory(x, coord.name = NULL, ...)

# S3 method for SlingshotDataSet
plot_trajectory(x, ...)

Arguments

x: and object with trajectory information.
...: arguments passed down to methods.
coord.name: name of the reduced dimension to use.