as.CellDataSet — as.CellDataSet • scmisc

Convert several data types into monocle::CellDataSet object.

as.CellDataSet(x, expressionFamily = NULL, gene_short_name = "symbol")

# S3 method for SingleCellExperiment
as.CellDataSet(x, expressionFamily = NULL, gene_short_name = "symbol")

Arguments

x: object to convert.
expressionFamily: expression family function to use (default: negbinomial.size)
gene_short_name: column to use to set gene_short_name

Value

a CellDataSet object.