plot_pairs — plot_pairs • scmisc

plot_pairs

plot_pairs(x, ...)

# S3 method for Seurat
plot_pairs(
  x,
  features = NULL,
  slot = "data",
  assay = NULL,
  color.by = NULL,
  add.contour = FALSE,
  color.contour = "red",
  cutoff = NULL,
  color.cutoff = "limegreen",
  ...
)

Arguments

x: object to plot.
...: arguments passed down to methods.
features: features to use for paired plots. If null all features in assay.
slot: slot from Seurat object.
assay: assay from Seurat object.
color.by: column from metadata to use for coloring points.
add.contour: whether to add contour plots.
color.contour: color for contour lines.