predict_celltyp

predict_celltyp

predict_celltype(x, org = "mouse", tissue = NULL, name = "immgen",
  db = NULL, ...)

# S3 method for Seurat
predict_celltype(x, org = "mouse", tissue = NULL,
  name = "immgen", db = NULL, assay.name = "data",
  gene.col = "symbol", ...)

# S3 method for SingleCellExperiment
predict_celltype(x, org = "mouse",
  tissue = NULL, name = "immgen", db = NULL,
  assay.name = "logcounts", gene.col = "symbol", ...)

# S3 method for ExpressionSet
predict_celltype(x, org = "mouse",
  tissue = NULL, name = "immgen", db = NULL, ...)

# S3 method for matrix
predict_celltype(x, org = "mouse", tissue = NULL,
  name = "immgen", db = NULL, ...)

Arguments

x	object with count matrix.
org	target organism.
tissue	name of the tissue.
name	name of cell type dictionary.
db	a matrix cell type dictionary.
...	arguments passed down to methods.
assay.name	name of the assay to obtain expression matrix.
gene.col	name of the column containing gene names (default: symbol).

Arguments

Contents