Align two motifs represented as PWMs

Takes to motifs represented by PWMs and computes an alignment using some measure of motif similarity as scoring method. By default this is Pearson Correlation Coefficient (PCC). Alternatively can be Euclidean distance.

motifAlign(x1, x2, align.method = "local", score.method = "PCC", debug = FALSE)

Arguments

x1	motif 1.
x2	motif 2.
align.method	align method, one of "global" or "local" (default = local).
score.method	scoring method, one of "PCC" or "euclid" (default = PCC).
debug	logical; whether to show debugging information.

Value

AlignResult object.

Examples

NULL
#> NULL