getMotifMatrix-methods.RdObtain a congintency matrix with the number of motifs per sequence. Alterna- tivelly return only presence/absence of motif, and/or only motifs/sequences with at least one non-zero entry.
getMotifMatrix(object, simplify = TRUE, filter = FALSE) # S4 method for MotifSearchResult getMotifMatrix(object, simplify = TRUE, filter = FALSE)
| object | a MotifSearchResult object. |
|---|---|
| simplify | whether to return a matrix of 0 (motif not present) and 1 (motif present). |
| filter | whether remove columns/rows with all zero entries. |
a matrix.
NULL#> NULL